Carlos Eckert

HPC & AI Infrastructure Engineer

I am the person who finds out that node 14 disagrees with the other thirty-three about which NVIDIA driver it is running. Sole administrator of three production clusters at Temple University — compute, storage and networking for 78+ researchers — plus a summer tuning GPU allocation across 356 nodes including H100 and A100 on Mount Sinai's 11-petaflop Minerva supercomputer.

The other half: I am a demanding user of the same hardware. VIEB, my GPU pipeline, grinds through 22M+ frames of mouse video hunting for behaviors nobody thought to name. Running a cluster and needing one teach different things. I refuse to pick.

3
Production
clusters
34
GPU
nodes
100+
CPU
nodes
78+
Researchers
supported
356
Nodes incl. H100
/ A100 on Minerva

Cluster operations

Three production clusters end to end — compute, storage, networking. Bare-metal PXE provisioning through Cobbler, configuration management in Ansible, monitoring in Ganglia, on AlmaLinux 9 / RHEL. Sole administrator: I own the full node lifecycle from rack to production scheduling.

Slurm internals & scheduler security

Multi-partition Slurm with GPU scheduling, fairshare and prolog/epilog. I ran an internal security assessment treating the scheduler as an attack surface — prolog/epilog injection, munge key handling, module system and SUID escalation paths — and hardened the cluster configuration against what it found.

Kubernetes & container orchestration

I work extensively with Kubernetes, including k3s for GPU clusters — GPU scheduling through the NVIDIA device plugin, node lifecycle, cordon and drain for maintenance, and reconciliation-based deployment of long-running services. Batch and orchestration are different tools for different shapes of work, and running both means I can put a workload where it belongs instead of where the scheduler forces it.

GPU fleet management

NVIDIA A100 and H100 fleets across heterogeneous hardware. Diagnosed and resolved a fleet-wide driver generation mismatch (570 vs 595), iDRAC event storms, and recurring GPU node scheduling failures — the unglamorous work that keeps utilization up.

Scientific computing pipelines

I run the cluster and I am also a demanding user of one. GPU-accelerated ML at scale: JAX/CUDA and cuML/RAPIDS debugging, chunked UMAP transforms in 200K-row batches to work around GPU memory limits. I know what the workloads on my nodes actually need.

High-Performance Computing Engineer · Temple University
Sept 2024 – Present
  • Sole administrator for three HPC clusters — compute, storage and networking — supporting 78+ researchers across multi-partition Slurm environments.
  • Provisioned and operated NVIDIA A100 GPU fleets on AlmaLinux 9 with Slurm, Cobbler, Ansible and Ganglia; own the full node lifecycle from bare-metal PXE provisioning through production scheduling.
  • Conducted an internal security assessment of the Slurm attack surface — prolog/epilog injection, munge key handling, module system and SUID escalation paths — and hardened cluster configuration accordingly.
  • Diagnosed and resolved a fleet-wide NVIDIA driver generation mismatch (570 vs 595), iDRAC event storms and recurring GPU node scheduling failures across heterogeneous hardware.
  • Taught the HPC module for an undergraduate REU cohort spanning biology, applied math, bioengineering, chemistry and computer science.
HPC Intern, Minerva · Mount Sinai Hospital
June – Aug 2025
  • Optimized and supported operations on Minerva, Mount Sinai's 11+ petaflop supercomputer, backing over 2,000 research workflows and $142M in NIH funding.
  • Developed utilization tracking across 356 nodes including H100 and A100 to dynamically rebalance allocations.
  • Reduced idle compute through usage-aware scheduling strategies, improving resource efficiency across the cluster.
Computational Neuroscience Assistant · Temple University
Dec 2025 – Present
  • Built a GPU-accelerated ML pipeline extracting 49–99 kinematic features per frame across 3,846 videos and 22M+ frames of behavioral recording.
  • Debugged JAX/CUDA and cuML/RAPIDS at scale — implemented chunked UMAP transforms in 200K-row batches to work around GPU memory constraints.
  • Ran IHC, Jess automated western blot (GFAP, GluA1, GluA2, NMDA1) and histological sectioning in a transgenic Alzheimer's mouse model.
VIEB — Video Interpreter Excluding Bias
In live experimental use

A GPU-accelerated behavioral analysis pipeline for rodent recordings. DeepLabCut pose estimation feeds a geometry and quality-control layer, then a model-free recurrence measurement — an exact GPU nearest-neighbor search across 22M+ frames across 3,846 recordings asking whether a stretch of one animal's movement has a close match in a different animal's, not which cluster a frame falls into. Against a fitted autoregressive null, cross-animal behavioral recurrence is detected at +1.64% [+1.21%, +2.08%].

Unsupervised segmentation is easy to fool, so the result stands on controls, not on a clustering diagram:

  • Phase-randomized & AR-fitted surrogate nulls
  • Animal-level bootstrap, never frame-level
  • A measured detection floor
  • An identity-leakage probe (0.27 nats)
  • Exact GPU search, no recall floor

The same instrument retracted one of its own headline claims: an earlier report of behavioral discreteness in 298 of 298 animals turned out to be reproducible from surrogate data through the identical fitted model, and was withdrawn. That is the audit working as intended, not failing.

It runs end to end from an interactive GUI — DeepLabCut extraction through the audit, no command line required — which is in active use in live neuroscience experiments and has to survive real data, real GPUs and real deadlines, not just a benchmark.

The GUI, mid-run — the pipeline this section describes, not just the scripts behind it.
github.com/toucheLos/VIEB

Extensible object-oriented scientific visualization software for neuronal modeling, supporting dynamic addition and removal of ion channel components. I implemented the Euler method solver for Hodgkin-Huxley action potential dynamics and cross-validated it against the Yale NEURON solver. Research Assistant, Temple University · Sept 2025 – May 2026.

Scheduling
Slurm (multi-partition, GPU scheduling, fairshare, prolog/epilog), munge, job accounting
Cluster & systems
AlmaLinux, RHEL, Ansible, Cobbler, Ganglia, bare-metal PXE provisioning, Buildbot, cluster security, Linux, Git
Orchestration
Kubernetes, k3s, NVIDIA device plugin, GPU scheduling, cordon/drain, containers
GPU & parallel
NVIDIA A100 / H100, CUDA, JAX, cuML / RAPIDS, LAMMPS
Languages
Python, C, C++, C#, Java, CUDA, Shell, SQL
Scientific computing
DeepLabCut, UMAP, HDBSCAN, NumPy / SciPy, Hodgkin-Huxley modeling, NEURON
Spoken
English, Spanish (advanced), Japanese (intermediate)

Batch. Jobs arrive with resource requests and wait in PENDING until the backfill pass finds a node with room. Multi-GPU jobs block until enough contiguous devices free up — which is exactly why a badly balanced partition sits idle with a full queue. Drain a node and watch the scheduler route around it.

  • VIEB: Unsupervised Behavioral State Discovery in Conditioned Fear Mouse Models
  • Forward Euler Validation Against the Yale NEURON Solver
  • Dynamic Modeling of Ion Channels in NeuroVISOR
  • Catan Agent

Occasional writing on cluster operations, scheduler internals and scientific computing. All notes →

Five-in-a-row against a threat-scoring bot, or against a friend over WebRTC with no server in the middle. React + TypeScript, peer-to-peer via PeerJS.
Play it
This page
The backdrop is a live connectome — Hodgkin-Huxley neurons wired with spike-timing dependent plasticity, growing and pruning their own synapses. Click anywhere to inject current and watch it fire.
Try clicking
The machine room. Every blue cable in this photo has been the answer to a ticket at least once.
Above the treeline, comfortably out of range of anything that could page me.
B.S. Computer Science and Mathematics · Temple University · May 2026
Founder, Temple Game Theory Club
Emailcarlos.eckert.dev@gmail.com
Phone267-850-8461
GitHubgithub.com/toucheLos
LinkedInin/carlos-eckert
LocationPhiladelphia, PA